PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913689
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 557aa    MW: 62862 Da    PI: 6.0779
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913689genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.6e-18991291
               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
         B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
               fk +     +++g +++p kf+e++++k   + +  l+ + g+ W v +  +k  ++ +l++GW++Fvka++L+e+D ++F+ +g+s+fe
  462913689  9 FKLM--TGDFAKG-ISIPEKFVENFNEK--ITEEFNLKVPGGEAWHVSV--KKDADELFLKSGWENFVKAHELQENDLLIFTCSGNSSFE 91
               5555..4445555.9*******888655..5568***************..*******************************99999985 PP

2B371.41.2e-22233325198
                EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ff+vl  s+v ++ + l++p kf+++++gk   +k++ l+ +sg++W+v +  +k  ++ +l++GW++Fvka++L+e+D +vF+++g+s+f   v +f+
  462913689 233 FFTVLQMSHVRRNnNFLSIPEKFVNNFNGK--ITKEVNLKAPSGETWQVGV--NKDADELFLKSGWEDFVKAHELQENDLLVFTFSGNSSF--EVLIFE 325
                78888888888874678*******888877..6779***************..**********************************9999..777776 PP

3B336.77.3e-12449547199
                EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                ff++l +s+v ++ + l++p +f+++h + ++    ++tl    + ++W vk+ + ++ +++    +  +Fv +n+L+egD++ F+l++  ++ +++v+v
  462913689 449 FFTILQKSHVRRNqNFLIFPCHFVADHlD-SN-L-HEITLCRpNRKEKWCVKYYHARTAQGIR-NYNFFRFVCENKLREGDICAFELMKGvRRVTMTVHV 544
                8999999999999667799********53.32.3.378888836669******7777777754.558999*****************9888********9 PP

                E-S CS
         B3  97 frk 99 
                +r+
  462913689 545 IRN 547
                986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.774598IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-18690IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-19791IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-17789No hitNo description
SMARTSM010193.4E-12898IPR003340B3 DNA binding domain
PfamPF023622.4E-15891IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-28225329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-26226329IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-22231324No hitNo description
SMARTSM010191.8E-18233327IPR003340B3 DNA binding domain
PfamPF023624.9E-20233326IPR003340B3 DNA binding domain
PROSITE profilePS5086316.807234327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16441546IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15444549IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-13447546No hitNo description
SMARTSM010191.4E-4449548IPR003340B3 DNA binding domain
PfamPF023621.3E-10449547IPR003340B3 DNA binding domain
PROSITE profilePS508639.122450548IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAVTKIRFFK LMTGDFAKGI SIPEKFVENF NEKITEEFNL KVPGGEAWHV SVKKDADELF  60
LKSGWENFVK AHELQENDLL IFTCSGNSSF EASGCEKASS LFANKTGPNM CKYSDDEVNQ  120
GQLDGHYSLS GSEDATTPSQ LVGSPQGGST SQKHTLVTSS LNDIVPCKKP RMLLQSPNSS  180
DDHVKHEAIG EGDSDEQNSN SNYYYSMIAN RLSDEEKEEI ISLASIQSDN PAFFTVLQMS  240
HVRRNNNFLS IPEKFVNNFN GKITKEVNLK APSGETWQVG VNKDADELFL KSGWEDFVKA  300
HELQENDLLV FTFSGNSSFE VLIFEANGCE KVSSLSANKT GANMLKHSAN KANWGKHDEQ  360
YSLSDSKNTS KPSQLVGSPQ VATTSQNSSG KKSRMLPESP KRGEVGEEDS DEEYSNHKYY  420
YSRIADRLSD EEKEEVITLA SIRSDNPAFF TILQKSHVRR NQNFLIFPCH FVADHLDSNL  480
HEITLCRPNR KEKWCVKYYH ARTAQGIRNY NFFRFVCENK LREGDICAFE LMKGVRRVTM  540
TVHVIRNVDD RTDDVKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963038.11e-142PREDICTED: B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-97Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
SwissprotQ2QMT55e-98Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBLK3Z7I51e-142K3Z7I5_SETIT; Uncharacterized protein
STRINGSi022505m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-29B3 family protein